2022
58. Cho, A.,
H. Jang, S. Baek, M.-J. Kim, B. Yim,
S. Huh, S.?H.Kwon, H.-J.
Yu*,
and J.-H. Mun. 2022. An improved Raphanus sativus cv. WK10039 genome localizes centromeres, uncovers
variation of DNA methylation and resolves arrangement of the ancestral Brassica
genome blocks in radish chromosomes. Theor Appl Genet
https://doi.org/10.1007/s00122-022-04066-3
2020
57. Yu,
H.-J.*, Y.M. Jeong, Y.J. Lee,
B. Yim, A. Cho, and J.-H. Mun. 2020. Marker integration and development of Fluidigm/KASP assays for high-throughput genotyping of
radish. Hortic Environ Biotechnol 61:
767-777.
56. Kim, G.-B.,
C.E. Lim, J.-S. Kim, K. Kim, J.H. Lee, H.-J. Yu, and J.-H. Mun. 2020. Comparative chloroplast genome analysis of Artemisia (Asteraceae) in East Asia:
insights into evolutionary divergence and phylogenomic implications. BMC
genomics 21: 1-17.
55. Yim, B., J.-H.
Mun, S.-H. Park, H.R. Shim,
J.-H. Kim, Y.Y. Hur, and H.-J. Yu*.
2020. Anatomical, biochemical
and transcriptome analyses of Vitis
vinifera cv. 'Hongju' reveal novel information
regarding the seed hardness of stenospermocarpic soft?seed grapes. Plant Breeding 139: 672-683.
2019
54. Kim, H.-J.,
S.-H. Park, J.-H. Kim, B. Yim, J.-H. Mun, H.B. Kim, Y.Y. Hur, and
H.-J. Yu*. 2019. An efficient strategy for developing
genotype identification markers based on simple sequence repeats in grapevine. Hortic Environ Biotechnol 60: 363-372.
53. Kim, G.-B.,
S.U. Son, H.-J. Yu, and J.-H. Mun. 2019. MtGA2ox10 encoding C20-GA2-oxidase
regulates rhizobial infection and nodule development
in Medicago truncatula.
Scientific reports 9: 1-13.
52. Yu,
H.-J.*, S. Baek, Y.J. Lee, A.
Cho, and J.-H. Mun. 2019. The radish genome database (RadishGD): an integrated information resource for radish
genomics. Database 2019: 2019
2018
51. Lee, Y.J.,
J.-H. Mun, Y.M. Jeong, S.-H. Joo, and H.-J. Yu*. 2018. Assembly of a radish core collection for
evaluation and preservation of genetic diversity. Hortic Environ Biotechnol
59: 711-721.
50. Baek, S., K. Choi, G.-B. Kim, H.-J. Yu, A.
Cho, H. Jang, C. Kim, H.-J. Kim, K.S. Chang, J.-H. Kim and J.-H. Mun. 2018.
Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization
between sympatric flowering cherries. Genome Biology 19: 1-17.
49. Lim,
C.E., G.-B. Kim, S.-A. Ryu, H.-J. Yu, and J.-H. Mun. 2018. The complete chloroplast genome of Artemisia hallaisanensis
Nakai (Asteraceae), an endemic medicinal herb in Korea.
Mitochondrial DNA Part B 3: 359-360.
2017
48. Cho, A.,
S. Baek, G.-B. Kim, C.-H. Shin, C.-S. Kim, K. Choi, Y.
Kang, H.-J. Yu, J.-H.
Kim and J.-H. Mun. 2017. Genomic clues to the parental origin of the
wild flowering cherry Prunus yedoensis var. nudiflora (Rosaceae). Plant biotechnology reports
11: 449-459.
47. Kwon, Y.-E.,
H.-J. Yu*, S. Baek, G.-B. Kim,
K.B. Lim, and J.-H. Mun. 2017. Development of gene-based identification
markers for Phalaenopsis ‘KS Little
Gem’ based on comparative genome analysis. Hortic Environ Biotechnol
58: 162-169.
46. Lim,
C.E., G.-B. Kim, S. Baek, S.-M. Han, H.-J.
Yu, and J.-H. Mun. 2017. The complete chloroplast genome of Aconitum chiisanense
Nakai (Ranunculaceae). Mitochondrial DNA Part A 28:
75-76.
2016
45. Kang, E.S.,
S.M. Ha, H.C. Ko, H.-J. Yu,
and W.B. Chae. 2016. Reproductive traits and molecular evidence related to the
global distribution of cultivated radish (Raphanus
sativus L.). Plant Systematics and Evolution 302: 1367-1380.
44. Choi, J.-E.,
G.-B. Kim, C.E. Lim, H.-J. Yu,
and J.-H. Mun. 2016. The complete chloroplast genome of Aconitum austrokoreense Koidz. (Ranunculaceae), an endangered endemic species in
Korea. Mitochondrial DNA Part B 1: 688-689.
43. Kim, N., Y.-M.
Jeong, S. Jeong, G.-B. Kim,
S. Baek, Y.-E. Kwon, A. Cho, S.-B. Choi, J. Kim, W.-J.
Lim, K.H. Kim, W. Park, J.-Y. Kim, J.-H. Kim, B. Yim,
Y.J. Lee, B.-M. Chun, Y.-P. Lee, B.-S. Park, H.-J. Yu*,
and J.-H. Mun. 2016.
Identification of candidate domestication regions in the radish genome based on
high-depth resequencing analysis of 17 genotypes. Theor Appl Genet 129: 1797-1814.
42. Jeong, Y. M., N. Kim, B.O. Ahn,
M. Oh, W.-H. Chung, H. Chung, S. Jeong, K.-B. Lim, Y.-J.
Hwang, G.-B. Kim, S. Baek, S.-B. Choi, D.-J. Hyung, S.-W.
Lee, S.-H. Sohn, S.-J. Kwon, M. Jin, Y.-J Seol, W.B. Chae, K.J. Choi, B.-S. Park, H.-J. Yu*,
and J.-H. Mun. 2016. Elucidating
the triplicated ancestral genome structure of radish based on chromosome-level
comparison with the Brassica genomes.
Theor Appl Genet 129: 1357-1372.
41. Kim, G.-B.,
Y. Kwon, H.-J. Yu, K.-B. Lim,
J.-H. Seo, and J.-H. Mun. 2016. The complete chloroplast genome of Phalaenopsis ‘Tiny Star’. Mitochondrial DNA
Part A 27: 1300-1302.
40. Jeong, Y.-M., W.-H. Chung, A.Y. choi, J.-H. Mun, N. Kim,
H.-J. Yu*. 2016. The complete mitochondrial genome of cultivated radish
WK10039 (Raphanus sativus L.).
Mitochondrial DNA Part A, 27(2),
941-942.
2015
39. Mun, J.-H., H.-J. Yu, Y.-J.
Hwang, M.-Y. Chung, C.-K. Kim, H.Y. Kim, and K.-B. Lim. 2015. Phenotypic
analysis of parents and their reciprocal F1 hybrids in Phalaenopsis. Hortic Environ Biotechnol 56: 612-617.
38. Yim, B., Y.-M. Jeong,
J.-H. Mun, Y.Y. Hur, and H.-J. Yu*. 2015. Identification
of Floral Development-related Gene Candidates in ‘Tamnara’ and ‘Himrod’ Grapes. Kor J Fruit Sci Technol 1: 93-98.
37. Larrainzar, E., B.K. Riely,
S.C. Kim, N. Carrasquilla-Garcia, H.-J.
Yu, H.-J. Hwang, M. Oh, G.B. Kim, A.K. Surendrarao,
D. Chasman, A.F. Siahpirani,
R.V. Penmetsa, G.-S. Lee, N. Kim, S. Roy, J.-H. Mun,
and D.R. Cook. 2015. Deep sequencing of the Medicago
truncatula root transcriptome reveals a massive
and early interaction between nodulation factor and ethylene signals. Plant
physiology 169: 233-265.
36. Yim, B., J.-H. Mun, Y.-M. Jeong, Y.Y. Hur, and H.-J. Yu*. 2015. Flower and
Microspore Development in Campbell Early (Vitis
labruscana) and Tamnara
(V. spp.) Grapes. Kor J Hort Sci Technol 33: 420-428.
35. Mun, J.-H., H. Chung, W.-H. Chung, M. Oh, Y.-M. Jeong, N. Kim, B.O. Ahn, B.-S. Park, S. Park, K.-B. Lim, Y.-J. Hwang, H.-J. Yu*. 2015. Construction of a reference genetic map of Raphanus
sativus based on genotyping by whole?genome resequencing. Theor Appl Genet 128: 259-272.
2014
34. Jeong, Y.-M., W.-H. Chung, J.-H. Mun, N. Kim, and H.-J. Yu*.
2014. De novo
assembly and characterization of the complete chloroplast genome of radish (Raphanus
sativus L.). Gene 551: 39-48.
33. Jeong, Y.-M., W.-H. Chung, H. Chung, N. Kim, B.-S. Park,
K.-B. Lim, H.-J. Yu*, and J.-H. Mun. 2014. Comparative analysis of the radish genome
based on a conserved ortholog set (COS) of Brassica.
Theor Appl Genet 127: 1975-1989.
32. Jung, C.J., Y.Y. Hur,
H.-J. Yu, J.-H. Noh, K.-S.
Park, and H.J. Lee. 2014. Gibberellin application at pre-bloom in grapevines down-regulates
the expressions of VvIAA9 and VvARF7, negative regulators of fruit set
initiation, during parthenocarpic fruit development. PLOS ONE 9: e95634.
31. Chung, H., Y.-M. Jeong,
J.-H. Mun, S.-S. Lee, W.-H. Chung, and H.-J. Yu*.
2014. Construction of a
genetic map based on high-throughput SNP genotyping and genetic mapping of a TuMV resistance locus in Brassica rapa. Mol Genet Genomics, 289: 149?160.
2013
30. Suh, E.-J., H.-J. Yu, B.H. Han, Y.P. Lim, M.-J. Jeong, S.-K. Lee, D.
Kim, A.-C. Chang, and B.W. Yae. 2013. Cataloguing of anther expressed genes through differential
slot blot in oriental lily (Lilium Oriental Hybrid ‘Acapulco'). Kor J Hort Sci Technol 31: 598-606.
29. Kim, J., W.-H. Kang, H.-B. Yang, S. Park, C.
Jang, H.-J. Yu, and B.-C. Kang. 2013. Identification of a broad-spectrum recessive gene
in Brassica rapa and molecular analysis of the
eIF4E gene family to develop
molecular markers. Mol Breeding 32: 385?398.
28. Kim, S.-Y., H.-J. Yu, J.K. Hong, J.G. Woo, and Y.K. Ahn. 2013. Functional analysis of female gametophyte
specific promoters in Chinese cabbage. Scientia Horticulturae
156: 29?37.
27. Kim, S.-Y., H.-J. Yu, J.-H. Kim, M.-C. Cho, and M. Park. 2013. Establishment of early verification method for
introduction of the binary trans-activation system in Chinese Cabbage (Brassica
rapa L. ssp. Pekinensis).
Kor J Hort Sci Technol 31: 95-102.
26. Riely,
B.K., E. Larrainzar,
C.H. Haney, J.-H. Mun, E. Gil-Quintana, E.M. Gonz?lez, H.-J.
Yu,
D. Tricoli, D.W. Ehrhardt, S.R. Long, and D.R. Cook. 2013. Development of tools
for the biochemical characterization of the symbiotic receptor-like kinase DMI2. MPMI 26: 216-226.
2012
25. Hwang, Y.-J., H.-J. Yu*, J.-H. Mun,
K.B. Ryu, B.-S. Park, and K.-B. Lim. 2012. Centromere
repeat DNA originated from Brassica rapa is
detected in the centromere region of Raphanus sativus chromosomes. Kor J Hort Sci Technol 30: 751-756.
24. Kim, B., H.-J. Yu*, S.-G. Park,
J.Y. Shin, M. Oh, N. Kim, and J.-H. Mun. 2012. Identification and profiling of
novel microRNAs in the Brassica rapa genome
based on small RNA deep sequencing. BMC Plant Biology 12: 218.
23. Mun, J.-H., H.-J. Yu*, J.Y. Shin,
M. Oh, H.-J. Hwang, and H. Chung. 2012. Auxin response factor gene family in Brassica rapa:
genomic organization, divergence, expression, and evolution. Mol Genet Genomics
287: 765?784.
2011
22. Yu,
H.-J.*, S.-G. Park, M. Oh, H.-J. Hwang, N. Kim, H. Chung, S.-H. Sohn,
B.-S. Park, and J.-H. Mun. 2011. The Brassica
rapa tissue-specific EST database. Kor J Hort Sci Technol 29: 634-640.
21. Chung, H., J.-H. Mun, S.-C. Lee, H.-J. Yu*. 2011. Pickprimer: A graphic user interface program for primer
design on the gene target region. Kor J Hort Sci Technol 29: 461-466.
2006-2010
20. Mun, J.-H., S.-J. Kwon, Y.-J. Seol, J.A. Kim, M. Jin, J.S. Kim,
M.-H. Lim, S.-I. Lee, J.K. Hong, T.-H. Park, S.-C. Lee, B.-J. Kim, M.-S. Seo, S. Baek, M.-J. Lee, J.Y.
Shin, J.-H. Hahn, Y.-J. Hwang, K.-B. Lim, J.Y. Park, J. Lee, T.-J. Yang, H.-J. Yu, I.-Y. Choi, B.-S. Choi, S.R. Choi, N. Ramchiary, Y.P. Lim, F. Fraser, N. Drou,
E. Soumpourou, M. Trick, I. Bancroft, A.G. Sharpe,
I.A. Parkin, J. Batley, D. Edwards and B.-S. Park.
2010. Sequence and structure of Brassica rapa chromosome A3. Genome biology, 11: 1-12.
19. Park, S., H.-J. Yu*, J.-H. Mun, S.-C. Lee. 2010. Genome-wide discovery
of DNA polymorphism in Brassica rapa. Mol Gen Genomics 283: 135-145.
18. Mun, J.-H., H.-J. Yu*, S. Park, B.-S. Park. 2009. Genome-wide
identification of NBS-encoding resistance genes in Brassica rapa. Mol Gen Genomics 282:
617-631.
17. Mun, J.-H., S.-J. Kwon, T.-J. Yang, Y.-J. Seol, M. Jin, J.-A. Kim, M.-H.
Lim, J.S. Kim, S. Baek, B.-S. Choi, H.-J. Yu, D.-S. Kim, N. Kim, K.-B. Lim, S.-I. Lee, J.-H. Hahn, Y.P. Lim, I. Bancroft,
and B.-S. Park. 2009. Genome-wide comparative analysis of the Brassica rapa
gene space reveals genome shrinkage and differential loss of duplication events
after whole genome triplication. Genome Biol 10: R111.
16. Boavida, L.C., B.
Shuai, H.-J. Yu, G.C. Pagnussat, V. Sundaresan, and S. McCormick. 2009. A collection of Ds insertional mutants associated with defects
in male gametophyte development and function in Arabidopsis thaliana. Genetics 181: 1369-1385.
15. Pagnussat, G.C.,
H.-J. Yu, and V. Sundaresan.
2007. Cell-fate switch of synergid to egg cell in Arabidopsis eostre mutant embryo sacs
arises from misexpression of the BEL1-like homeodomain gene BLH1. Plant Cell 19: 3578-3592.
2001-2005
14. Yu,
H.-J.*, P. Hogan, and V. Sundaresan. 2005. Analysis of the female gametophyte
transcriptome of Arabidopsis by
comparative expression profiling. Plant Physiol 139:
1853-1869.
13. Pagnussat, G.C.,
H.-J. Yu*, Q.A. Nago, S. Rajani, S. Mayalagu,
C.S. Johnson, A. Capron, L.-F. Xie, D. Ye, and V. Sundaresan. 2005. Genetic and molecular identification of
genes required for female gametophyte development and function in Arabidopsis. Development 132: 603-614.
12. Han, B.-H., E.-J. Suh, B.-W. Yae, and H.-J. Yu.
2004. Micropropagation of Lilium longiflorum 'Geogia' by Using
Bioreactor. Kor J Plant Biotechnol
31: 197-201.
11. Han, B.-H., B.-W. Yae,
D.H. Goo, and H.-J. Yu. 2004.
Micropropagation of Philodendron wend-imbe through adventitious multi-bud cluster formation. Kor J Plant Biotechnol 31: 115-119.
10. Hwang, H.-J., H. Kim, H.-J. Yu, M.-H. Oh, I. Lee, and S.-G. Kim. 2003. Gene
encoding pathogenesis-related 10 protein of Lithospermum
erythrorhizon is responsive to exogenous stimuli
related to the plant defense system. Plant Science 165: 1297-1302.
9. Yu,
H.-J.*, E.-J. Suh, B.-W. Yae, B.-H. Han, and
I.-G. Mok, 2002. Analysis of organ-specific and
preferentially expressed genes from anther and tepal of lily. Acta Hort 625: 71-77.
8. Mun, J.-H., S.-Y. Lee, H.-J. Yu, Y.-M. Jeong, M.-Y. Shin,
H. Kim, I. Lee, and S.-G. Kim. 2002. Petunia actin-depolymerizing factor is
mainly accumulated in vascular tissue and its gene expression is enhanced by
the first intron. Gene 292: 233-243.
1991-2000
7. Mun, J.-H., H.-J. Yu, H.S. Lee, Y.M. Kwon, J.S. Lee, I. Lee, and S.-G.
Kim. 2000. Two closely related cDNAs encoding actin-depolymerizing factors of
petunia are mainly expressed in vegetative tissues. Gene 257: 167-176.
6. Yu,
H.-J.*, M.S. Moon, H.S. Lee, J.-H. Mun, Y.M. Kwon, and S.-G. Kim. 1999.
Analysis of cDNAs expressed during first cell division of petunia petal
protoplast cultures using expressed sequence tags. Mol Cells 9: 258-264.
5. Yu,
H.-J.*, J.-H. Mun, Y.M. Kwon, J.S. Lee, and S.-G. Kim. 1999. Two cDNAs
encoding pathogenesis-related proteins of Lithospermum
erythrorhizon display different expression
patterns in suspension cultures. J Plant Physiol. 155: 364-370.
4. Yu,
H.-J.*, S.K. Oh, M.-H. Oh, D.-W. Choi, Y.M. Kwon, and S.-G. Kim. 1997. Plant
regeneration from callus cultures of Lithospermum
erythrorhizon. Plant Cell Reports 16: 261-266.
3. Lyi, S.B., H.-J. Yu, M.-H. Oh, and S.-K. Kim.
1993. Changes of in vitro protein synthesis in suspension cultured cells of Lithospermum erythrorhizon.
Kor J Genetics 15: 307-316.
2. Song, H.-W., H.-J. Yu, and S.-K. Kim.1991. Electrophoretic analysis of
soluble proteins from crown gall cell lines of Phaseolus vulgaris L. Kor J Genetics 13:113-122.
1. Kim, S.-K., and H.-J. Yu. 1991. Production of shikonin
derivatives by cell lines of Lithospermum erythrorhizon:
selection for high shikonin production in lines of
single cell origin. Kor J Plant Tissue Culture 18:
313-321.
*, first author or
corresponding author
